All functions

check_homer

Check for working HOMER installation

find_motifs_genome

Find Motifs over Regions

find_motifs_instances

Find Instances of Motifs Across Regions

get_homer_base

Get the base installation directory of HOMER

HOMER_motifs

HOMER Database of Motifs

list_homer_packages

List installed/available HOMER packages

read_denovo_results

Read Denovo Enriched Motifs HOMER Output

read_known_results

Read Known Enriched Motifs HOMER output

read_motif

Read HOMER Motif Files

read_motifs_instances

Read Instances of Motifs Across Regions

write_homer_motif

Write Motif PWM in HOMER format